클라우드 컴퓨팅 소개 - 유전체학(Genomics): Instructor Notes

Cloud Genomics Pre-Workshop

Using the cloud genomics lesson materials may involve using Amazon EC2 instances. To get this up and running, do the following:

VM Image Directories A high-level listing of the directory tree from the dcuser account is shown below. Please note that is may be subject to change over time, but we’ll try to remember to update this doc.

dcuser@ip-172-31-50-230:~$ tree -L 2
.
├── dc_sample_data
│   ├── r_genomics
│   ├── sra_metadata
│   └── untrimmed_fastq
├── Desktop
│   ├── firefox.desktop
│   ├── gnome-terminal.desktop
│   ├── nautilus.desktop
│   └── rstudio.desktop
├── Downloads
├── FastQC
│   ├── Configuration
│   ├── fastqc
│   ├── fastqc_icon.ico
│   ├── Help
│   ├── INSTALL.txt
│   ├── jbzip2-0.9.jar
│   ├── LICENSE.txt
│   ├── net
│   ├── org
│   ├── README.txt
│   ├── RELEASE_NOTES.txt
│   ├── run_fastqc.bat
│   ├── sam-1.103.jar
│   ├── Templates
│   └── uk
├── openrefine-2.6-beta.1
│   ├── licenses
│   ├── LICENSE.txt
│   ├── README.txt
│   ├── refine
│   ├── refine.ini
│   ├── server
│   └── webapp
├── R
│   └── x86_64-pc-linux-gnu-library
└── Trimmomatic-0.32
    ├── adapters
    ├── LICENSE
    └── trimmomatic-0.32.jar

21 directories, 19 files

During the workshop

We had a couple instances die as we were going through our workshop.

ping hostname